FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index18_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18771891 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4136615 | 2.6316435 | 5.5253296 | 1 |
| CCTGG | 4099015 | 2.58845 | 6.0196056 | 1 |
| CTTCT | 4104305 | 2.5217104 | 6.194597 | 1 |
| CTGGA | 3820060 | 2.449141 | 9.553831 | 1 |
| TCCAG | 3780495 | 2.372347 | 6.1267104 | 2 |
| CTGCT | 3731545 | 2.3243237 | 5.480035 | 1 |
| CTCCT | 3798540 | 2.3158507 | 8.765903 | 1 |
| CTGGG | 3514335 | 2.2673445 | 8.943328 | 1 |
| CAGGA | 3491030 | 2.254856 | 5.635007 | 1 |
| CTTCA | 3571965 | 2.2109778 | 6.321129 | 1 |
| CTCCA | 3539155 | 2.1737776 | 8.984144 | 1 |
| CCCAG | 3462345 | 2.1559474 | 7.5369377 | 1 |
| CAGAA | 3231890 | 2.0743935 | 5.0538545 | 1 |
| CTCTG | 3218490 | 2.0047493 | 6.9099936 | 1 |
| CTGCA | 3149360 | 1.9762955 | 5.25334 | 1 |
| CTTCC | 3193235 | 1.9468151 | 5.1904135 | 1 |
| CTGGC | 3007485 | 1.8991694 | 5.852281 | 1 |
| TGGAA | 2863115 | 1.8636564 | 5.402299 | 2 |
| CTGAA | 2881985 | 1.8361353 | 5.998154 | 1 |
| CTTTT | 2927215 | 1.8124744 | 5.2620707 | 1 |
| CTGAG | 2693795 | 1.7270631 | 5.2960706 | 1 |
| CTCAG | 2748820 | 1.7249475 | 6.884515 | 1 |
| CTTTG | 2714840 | 1.7041737 | 5.433784 | 1 |
| CTGGT | 2640345 | 1.6802839 | 5.5564017 | 1 |
| CTTGG | 2571875 | 1.6367104 | 5.681228 | 1 |
| CTCCC | 2524450 | 1.5272104 | 5.609169 | 1 |